lnschema_covim.types

Types.

InstituteAbbreviation

alias of Literal['Site_A', 'Site_B', 'Site_C', 'Site_D', 'Site_E', 'Site_F', 'Site_G', 'Site_H', 'Site_I', 'Site_J', 'Site_K', 'Site_L', 'Site_M', 'Site_N', 'Site_O', 'Site_P']

Sample

alias of Literal['whole blood', 'PBMC', 'sorted populations', 'plasma', 'serum', 'saliva', 'tissue biopsy', 'cerebrospinal fluid']

ExperimentType

alias of Literal['whole genome sequencing', 'RNA sequencing', 'exome sequencing', 'targeted sequencing', 'nanopore sequencing', 'long-read sequencing', 'bisulfite sequencing', 'ATAC-seq', 'ChIP-seq', 'Hi-C', 'CyTOF', 'ELISA', 'western blot', 'mass spectrometry', 'Luminex', 'immunohistochemistry', 'immunofluorescence', 'CRISPR screening', 'FACS', 'CITE-seq', 'Abseq', 'other']

Sex

alias of Literal['male', 'female', 'other', 'unknown']

Group

alias of Literal['CON', 'CV-19']

PcrTestResult

alias of Literal['positive', 'negative', 'unknown']

DiseasePhase

alias of Literal['healthy', 'acute', 'convalescent', 'recovered', 'unknown']

StatusOnRelease

alias of Literal['HC', 'ill', 'chronic', 'recovered', 'deceased', 'unknown']