lnschema_covim.standardize_markers

lnschema_covim.standardize_markers(adata, add_new=False, var_key='marker')

Standardize cell marker names.

Parameters:

  • adata (AnnData) – AnnData object.

  • add_new (bool, default: False) – Whether to add new markers to the registry.

  • var_key (str, default: 'marker') – The var key to standardize

Return type:

None

Returns:

An inplace function that modifies the adata.var[var_key]